The
production of a high quality library containing a large number of
full-length cDNA clones requires that the tissue and RNA preparation
be performed in a certain way. These methods will help to guarantee
that the starting material and ultimately the cDNA library are not
compromised.
To
minimize RNA degradation, all tissues and cells need to be prepared
as quickly as possible and flash frozen in liquid nitrogen. These
samples should be stored at -80°C and shipped packed in a large
quantity of dry ice.
If
RNA is to be isolated, the frozen tissues should be ground to a
fine powder using liquid nitrogen and a mortar and a pestle. To
isolate RNA from cells, the cells should be pelleted and the pellet
washed with PBS. Total RNA should be quickly isolated by sample
homogenization or lysis using a reagent, such as TRIzol or equivalent.
Total RNA can be further processed to mRNA using most commercial
kits. Total RNA or mRNA should be dissolved in nuclease-free water
(no DEPC) at a concentration of 1
µg/µl. The mRNA to be used in the construction of microquantity
libraries may be sent at 100 ng/µl. For nanoquantity libraries,
the total RNA may be sent at 25 ng/µl and the mRNA at 1 ng/µl.
The A260/A280 ratio must be at least 1.8. RNA should be stored at
-80°C and shipped packed in a large quantity of dry ice. Please
include a gel photo of the total RNA in the shipment. An indicator
of total RNA quality is the 28S rRNA band is nearly twice the intensity
of the 18S rRNA band.
Depending
on the type of cDNA library that is desired, different amounts of
tissue, cells or RNA will be needed (see below).
cDNA
Library Requirements |
Type
of cDNA Library |
Amount
of Tissue |
Number
of Cells |
Amount
of Total RNA |
Amount
of mRNA |
Standard |
1
g |
1x108 |
1
mg |
5
µg |
Large
Insert |
2
g |
2x108 |
2
mg |
10
µg |
Microquantity |
100
mg |
1x107 |
50
µg |
500
ng |
Nanoquantity |
250
µg |
25,000 |
250ng |
5ng |
*For
your convenience, our qualified staff can isolate mRNA from your
total RNA, tissue or cell samples.
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